PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788087.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 164aa    MW: 18048.6 Da    PI: 10.6128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20858256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  XP_009788087.1  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58
                    69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.18E-30867No hitNo description
PROSITE profilePS5103222.695865IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22866IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-32866IPR001471AP2/ERF domain
PfamPF008472.7E-13857IPR001471AP2/ERF domain
SMARTSM003803.3E-34871IPR001471AP2/ERF domain
PRINTSPR003674.6E-11920IPR001471AP2/ERF domain
PRINTSPR003674.6E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAATREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA  60
RTNFPAAPPL PFDLNLNPSV DHHHRLTSSS SSSARRLMNI GEFLQVGHPV LKDVVGPPPP  120
PVFNLPVSGV APAKENESGP AAKYFGIVRR GLPIDLNEPP PLWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21865563ATERF1
3gcc_A2e-21865563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690800.0AB669080.1 Nicotiana tabacum NtERF#116 gene for ethylene response factor #116, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788087.11e-117PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID63e-44ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLR4WAI61e-109R4WAI6_TOBAC; Ethylene response factor #116
STRINGSolyc02g077840.1.11e-70(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-39ERF domain protein 12